Noel O'Blog
Tuesday, 31 December 2024
push and pop directories
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Here's a tool that I've been using daily since 2005 at least. I had a write-up on my old website, but with its recent disappearance ...
Saturday, 28 December 2024
The effect of ties on evaluation of virtual screens
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For a virtual screening method where the associated score is prone to ties (e.g. a fingerprint comparison), care must be taken to handle the...
Friday, 20 December 2024
Engagement on X vs Mastodon vs BlueSky
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Egon posted recently on the situation with scientists leaving X and moving to another microblogging platform. He pointed out some pros and ...
Monday, 16 December 2024
Moving to pastures new, but still in the same field Part IV
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Following on from my previous post on the topic, I will shortly be leaving Nxera Pharma (Sosei Heptares as was). The last five years at N...
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Thursday, 12 September 2024
Do NOT use SDFdb
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It's not even a real database. All it does is: import sdfdb db = sdfdb.SDFdb( " mysdf.sdf " ) molfile = db.get_mol( " ...
Tuesday, 4 June 2024
Every ChEMBL everywhere, all at once
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The team over at ChEMBL has just announced a symposium to celebrate 15 years of ChEMBLdb and 10 of SureChEMBL. With this in mind (or perhap...
Thursday, 28 March 2024
Learning the LINGO
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LINGO is a simple similarity measure for SMILES strings, based on shared n-grams between the strings themselves. In many respects the rela...
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