Noel O'Blog

Monday, 28 July 2025

A new job, a postdoc opportunity, an open biological curator role, and a user group meeting

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Almost exactly 6 months ago, I took over the leadership of the Chemical Biology Services team at EMBL-EBI, Hinxton, UK. This is the team th...
Saturday, 12 July 2025

A 16-year time loop

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Next week I wlil be attending the Computer Aided Drug Design Gordon Research Conference (CADD GRC) in the US (Maine). The last (and only)...
Sunday, 9 February 2025

MMPA: The case of the missing group Part II

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I was reading over my recent blogpost on MMPA when I started wondering whether the approaches I described actually were the best ways of fi...
Saturday, 1 February 2025

SmiZip 2.0 released

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SmiZip is a compressor for SMILES strings that uses the unused characters from the extended ASCII set. So, for example, while the character...
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Friday, 24 January 2025

MMPA: The case of the missing group

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An efficient approach to Matched Molecular Pair Analysis (MMPA) consists of fragmenting molecules at a subset of single bonds and then colla...

ReplaceR - common R group and linker replacements

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Introducing ReplaceR , a webapp that suggests R group or linker replacements that a medicinal chemist might consider making after the query...
Tuesday, 14 January 2025

Release of partialsmiles v2.0 - A validating parser for partial SMILES

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A while back , I wrote a library called partialsmiles to parse and validate prefixes of SMILES strings. I've just updated it with a min...
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Noel O'Boyle
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