Noel O'Blog

Tuesday, 23 January 2018

Which came first, the atom or the bond?

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Let's suppose you need to iterate over the neighbours of an atom, and you want to know both the corresponding bond order and the atomic ...
3 comments:
Thursday, 18 January 2018

Implementing the Sayle tautomer hash with Open Babel

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One of the consequences of last year's overhaul of handling of kekulization, aromaticity and implicit hydrogens is the ability to easily...
9 comments:
Sunday, 17 December 2017

Faster toolkit, faster! Part II

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A while ago I described some work I was doing to improve the overall speed of the Open Babel toolkit. Here I want to focus on a particular ...
1 comment:

Open Babel in a snap II

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This is a quick update on a previous post , where I mentioned that I had made Open Babel available as a snap. That snap is the released vers...
Thursday, 2 November 2017

Announcing more closures

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It is a good idea to avoid extending an existing format. If additional information needs to be stored, many formats provide a means to store...
Sunday, 1 October 2017

Open Babel in a snap

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Maintainers of Linux distributions do an amazing job packaging applications for users, so that "apt/dnf install openbabel"  makes ...
2 comments:
Saturday, 23 September 2017

How many cheminformaticians does it take to read a SMILES string?

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A few days ago I posted the following poll question on Twitter: How many Hs are on the N in the molecule described by this SMILES string? ...
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Noel O'Boyle
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