Noel O'Blog

Saturday, 25 February 2012

Portrait of the molecule as a green substructure

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I've already mentioned using Open Babel for depicting with SVG . That's a handy way to view a large set of molecules; you can zoom i...
12 comments:
Thursday, 23 February 2012

On reflection, transforming molecules is tricky

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I've just spent quite some time trying to get the mirror-image of a chiral ligand in a metal-ligand complex. It took me a good while to ...
Wednesday, 15 February 2012

Towards a Novel Future

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The recent JCAMD issue celebrating 25 years of that journal is full of articles speculating on the future of the field over the coming 25 y...
Friday, 10 February 2012

Resources for Computational Drug Discovery

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As mentioned by John Overington , the Joint EMBL-EBI/Wellcome Trust Course: Resources for Computational Drug Discovery on 2-5 July (see lin...
Friday, 3 February 2012

LICSS hits the press, and an update on the OB/BO papers

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I've written here before about how Kevin Lawson (of Syngenta) has developed a way to incorporate chemistry into Excel using only freely...
Thursday, 26 January 2012

Visualising the fragments in a path-based fingerprint

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With any tool, users will often come up with ways of applying it that the developers of the tool did not originally anticipate. In the Open ...
5 comments:
Tuesday, 17 January 2012

What's up dock? - Calculate the RMSD between docked and crystal poses

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In cheminformatics, there are two reasons why one might want to calculate the RMSD between two conformers. The first is to check whether two...
7 comments:
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